The NucleicNet is a software that analyse on protein atomic model to predict binding preference of
RNA constituents (Phosphate, Ribose and 4 bases AUCG) on any location of the given protein surface.
Three major utilities are provided on this webserver:
Analyse custom protein surface
Users can upload protein structure written in PDB file format to our Protein Surface Analysis tab and follow instructions therein.
This utility corresponds with Fig. 3 of our manuscript.
Generating Sequence Logo
Users can upload additional RNA-protein complex structure to our Logo tab to generate sequence logos.
This utility corresponds with Fig. 3-4 of our manuscript.
Scoring miRNA loading preference
Users can input comma-separated miRNA sequence on our hAgo2-miRNA Scoring tab and follow instructions therein.
This utility corresponds with Fig. 5 of our manuscript.