Protein Surface Analysis

NucleicNet analyses on protein structures to predict top binding sites for each RNA constituent. Users can upload protein structures written in PDB file format to visualise the binding sites as a pymol session.
To allow a uniform processing of PDB files, users are recommended to check validity of their input files by observing criteria specified on https://github.com/NucleicNet/NucleicNet/wiki/Specification-on-PDB-input-files.
Download an example of PDB input file directly here.
More examples of valid PDB input files are provided on https://github.com/NucleicNet/NucleicNet/tree/master/GridData.

Upload an input file:



This tool is for academic purposes and research use only. Any commercial use is subject for authorization from King Abdullah University of Science and Technology. Please contact us at ip@kaust.edu.sa.

Please wait patiently and do not press refresh.
For small size protein (e.g. PDBID: 2adc with < 300 residues), full run should take less than 5 minutes.
For large size protein (e.g. PDBID: 4f3t with > 800 residues), full run could take more than 10 minutes.