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Feature Counts


Feature
ORFs438039
rRNA745
tRNA5445
rfamRNA7777
Uniprot421152
KEGG291731
COG260844
InterPro329964
GO224287
TotalAnnotatedGenes435496
TotalUnassignedGenes16507
Bioactive Genes 586
Industrial Proteins of Interest (POIs) 82680
Total contigs or gene catalogue genes36091


Retreive sequences
OR

Provide Taxonomic-level for contig binning
Phylum   Class   Order   Family   Genus
Species

See refined binning report with links to fasta sets: 72 bin(s) & bins plot, scores plot.


rfam taxonomy assignments , counts for top 10 categories

293BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeAcetoanaerobiumAcetoanaerobium sticklandii Clostridium sticklandii:1511
159BacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeMoorellaMoorella thermoacetica Clostridium thermoaceticum:264732
136BacteriaFirmicutesBacilliBacillalesPlanococcaceaeSporosarcinaSporosarcina newyorkensis:1027292
134BacteriaFirmicutesBacilliBacillalesBacillaceaeAnoxybacillusAnoxybacillus flavithermus:491915
110BacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeAchromobacterAlcaligenes xylosoxydans xylosoxydans Achromobacter xylosoxidans:762376
100BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium tetani:212717
97BacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeBrevundimonasBrevundimonas subvibrioides:633149
90BacteriaFirmicutesBacilliBacillalesExiguobacterium_unresolvedExiguobacteriumExiguobacterium sibiricum:262543
81BacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeAsticcacaulisAsticcacaulis excentricus:573065
74BacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaeAzotobacterAzotobacter vinelandii:322710

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rrna taxonomy assignments , counts for top 10 categories

24BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeClostridioidesClostridioides difficile Peptoclostridium difficile:272563
24BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeAcetoanaerobiumAcetoanaerobium sticklandii Clostridium sticklandii:1511
20BacteriaFirmicutesBacilliBacillalesPaenibacillaceaePaenibacillusPaenibacillus polymyxa Bacillus polymyxa:886882
18BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeBacteria_unresolvedClostridium paradoxum:1121328
15BacteriaFirmicutesClostridiaThermoanaerobacteralesThermoanaerobacteraceaeThermoanaerobacterThermoanaerobacter wiegelii:697303
14BacteriaFirmicutesBacilliBacillalesExiguobacterium_unresolvedExiguobacteriumExiguobacterium antarcticum:1087448
12BacteriaFirmicutesTissierelliaTissierellalesGottschalkiaceaeGottschalkiaClostridium acidurici Gottschalkia acidurici:1128398
10BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium tetani:1513
10BacteriaElusimicrobiaBacteria_unclassifiedBacteria_unclassifiedBacteria_unclassifiedBacteria_uncultured Termite group 1 bacterium:471821
9BacteriaFirmicutesClostridiaClostridialesLachnospiraceaeButyrivibrioButyrivibrio proteoclasticus:43305

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coding taxonomy assignments , counts for top 10 categories

17768BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeAcetoanaerobiumAcetoanaerobium noterae:745369
16758BacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeMassiliaMassilia sp Root1485:1736472
11674BacteriaFirmicutesClostridiaClostridialesClostridiales Family XVI. Incertae SedisCarboxydocellaCarboxydocella sporoproducens:1121270
10983BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaPseudonocardialesPseudonocardiaceaeKibdelosporangiumKibdelosporangium aridum:2030
9461BacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeOhtaekwangiaOhtaekwangia koreensis:688867
7858BacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceae purple nonsulfur bacteriaPhaeospirillumPhaeospirillum fulvum Rhodospirillum fulvum:1316936
7705BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccusParacoccus pantotrophus Thiosphaera pantotropha:82367
7155BacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonasSphingomonas sp Root720:1736595
6552BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacterRhodobacter capsulatus Rhodopseudomonas capsulata:1061
6539BacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesMethylophilaceaeMethylophilusMethylophilus sp Leaf416:1736373

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combined taxonomy assignments , counts for top 10 categories

17768BacteriaFirmicutesClostridiaClostridialesPeptostreptococcaceaeAcetoanaerobiumAcetoanaerobium noterae:745369
16758BacteriaProteobacteriaBetaproteobacteriaBurkholderialesOxalobacteraceaeMassiliaMassilia sp Root1485:1736472
11674BacteriaFirmicutesClostridiaClostridialesClostridiales Family XVI. Incertae SedisCarboxydocellaCarboxydocella sporoproducens:1121270
10984BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaPseudonocardialesPseudonocardiaceaeKibdelosporangiumKibdelosporangium aridum:2030
9466BacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeOhtaekwangiaOhtaekwangia koreensis:688867
7858BacteriaProteobacteriaAlphaproteobacteriaRhodospirillalesRhodospirillaceae purple nonsulfur bacteriaPhaeospirillumPhaeospirillum fulvum Rhodospirillum fulvum:1316936
7705BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeParacoccusParacoccus pantotrophus Thiosphaera pantotropha:82367
7155BacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingomonasSphingomonas sp Root720:1736595
6557BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRhodobacterRhodobacter capsulatus Rhodopseudomonas capsulata:1061
6539BacteriaProteobacteriaBetaproteobacteriaNitrosomonadalesMethylophilaceaeMethylophilusMethylophilus sp Leaf416:1736373

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COG , counts for top 10 categories

2024METABOLISMSecondary metabolites biosynthesis, transport and catabolismCOG1028
2024POORLY CHARACTERIZEDGeneral function prediction onlyCOG1028
2024METABOLISMLipid transport and metabolismCOG1028
1851INFORMATION STORAGE AND PROCESSINGTranscriptionCOG0583
1640METABOLISMAmino acid transport and metabolismCOG0477
1640METABOLISMCarbohydrate transport and metabolismCOG0477
1640METABOLISMInorganic ion transport and metabolismCOG0477
1640POORLY CHARACTERIZEDGeneral function prediction onlyCOG0477
1484INFORMATION STORAGE AND PROCESSINGTranscriptionCOG1595
1420CELLULAR PROCESSES AND SIGNALINGSignal transduction mechanismsCOG0745

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DOMAINS , counts for top 10 categories

8150DomainIPR003439:ABC transporter-like
6428Conserved_siteIPR017871:ABC transporter, conserved site
5094DomainIPR001789:Signal transduction response regulator, receiver domain
4756DomainIPR000515:ABC transporter type 1, transmembrane domain MetI-like
4014DomainIPR003594:Histidine kinase-like ATPase, C-terminal domain
2834FamilyIPR011701:Major facilitator superfamily
2392DomainIPR001647:DNA-binding HTH domain, TetR-type
2392DomainIPR000182:GNAT domain
2383DomainIPR003661:Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
2284DomainIPR005119:LysR, substrate-binding

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All Annotation Sources Summary , counts for top 10 categories

127691Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA
70781Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINS-NAGO-NABIOACTIVEs-NAIndustrialPOIs-NA
55709Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs
35996Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
32432Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
19675Protein(ORF)With AnnotationUNIPROTCOG-NAKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA
16507Protein(ORF)Without AnnotationUNIPROT-NACOG-NAKEGG-NADOMAINS-NAGO-NABIOACTIVEs-NAIndustrialPOIs-NA
11870Protein(ORF)With AnnotationUNIPROTCOG-NAKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
11283Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs
10419Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA

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IndustrialPOIs , counts for top 10 categories

1385High Identities >=45%Medicine_and_PharmaDrug_development.POIOxidoreductases.NADH:ubiquinone reductase (H(+)-translocating).EC:1.6.5.3
1385High Identities >=45%EnvironmentDegradation.POIOxidoreductases.NADH:ubiquinone reductase (H(+)-translocating).EC:1.6.5.3
1183High Identities >=45%Medicine_and_PharmaPharmaceutical_generic.POIHydrolases.DNA helicase.EC:3.6.4.12
1118High Identities >=45%Medicine_and_PharmaDrug_development.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
1118High Identities >=45%AnalyticsDiagnostics_generic.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
1118High Identities >=45%Molecular_biologyMolecular_biology.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
1026Low Identities <45%Molecular_biologyMolecular_biology.POITransferases.Diguanylate cyclase.EC:2.7.7.65
1026Low Identities <45%Bioprocess_engineeringSynthesis.POITransferases.Diguanylate cyclase.EC:2.7.7.65
659High Identities >=45%Medicine_and_PharmaMedical_generic.POIHydrolases.Serine-type D-Ala-D-Ala carboxypeptidase.EC:3.4.16.4
607High Identities >=45%Medicine_and_PharmaDrug_development.POIOxidoreductases.3-oxoacyl-[acyl-carrier-protein] reductase.EC:1.1.1.100

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KEGG , counts for top 10 categories

1594noBRITEcategorySuperPathway-NASpecific-Pathway-NAPathway-NARNA polymerase sigma-70 factor, ECF subfamily
1594Transcription machinerySuperPathway-NASpecific-Pathway-NAPathway-NARNA polymerase sigma-70 factor, ECF subfamily
1425noBRITEcategoryCellular ProcessesCell motilityBacterial chemotaxismethyl-accepting chemotaxis protein
1425Bacterial motility proteinsEnvironmental Information ProcessingSignal transductionTwo-component systemmethyl-accepting chemotaxis protein
1425KEGG Orthology (KO)Cellular ProcessesCell motilityBacterial chemotaxismethyl-accepting chemotaxis protein
1425Bacterial motility proteinsCellular ProcessesCell motilityBacterial chemotaxismethyl-accepting chemotaxis protein
1425KEGG Orthology (KO)Environmental Information ProcessingSignal transductionTwo-component systemmethyl-accepting chemotaxis protein
1425noBRITEcategoryEnvironmental Information ProcessingSignal transductionTwo-component systemmethyl-accepting chemotaxis protein
1406noBRITEcategorySuperPathway-NASpecific-Pathway-NAPathway-NAputative transposase
1132KEGG modulesMetabolismLipid metabolismFatty acid biosynthesis3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]

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AntiBioticResistance , counts for top 10 categories

395multidrugmultidrug_ABC_transporter
317multidrugmtrA
250multidrugompR
235glycopeptidevanR
217tetracyclinetetA(48)
107bacitracinbcrA
98bacitracinbacA
96beta-lactampenA
94aminoglycosidekasugamycin_resistance_protein_ksgA
92multidrugmexT

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GO , counts for top 10 categories

24381Biological Processoxidation-reduction processGO:0055114
24228Subcellular LocationmembraneGO:0016020
23673Molecular FunctionATP bindingGO:0005524
17925Biological Processregulation of transcription, DNA-dependentGO:0006355
17922Subcellular Locationintegral to membraneGO:0016021
17786Molecular FunctionDNA bindingGO:0003677
15074Biological ProcesstransportGO:0006810
14944Molecular Functionoxidoreductase activityGO:0016491
13607Molecular Functioncatalytic activityGO:0003824
13442Biological Processmetabolic processGO:0008152

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BIOACTIVEs , counts for top 10 categories

111High Identities >=45%secretedEnolase Sourceseno
90High Identities >=45%toxinRibonuclease VapC SourcesvapC
45High Identities >=45%secretedFlagellar hook-associated protein 1 SourcesflgK
11High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesSAMN02745885_01828
11High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesSAMN02745120_2590
9High Identities >=45%secretedFlagellin SourcesSAMN02745885_01838
6High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesfliD
5High Identities >=45%secretedFlagellin SourcesASD92_02685
5High Identities >=45%secretedFlagellin SourcesSAMN02745120_2614
5High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesASD92_03365

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Results are available as shown below.
  • All annotation result files and interactive html graphs, also explained here.
  • All annotation result files archived in one tar.gz file {right click and save}

  • NOTE:If you want to add these annotations to INDIGO or DMAP, please write to us quoting this tag:

    1502720420145_CamiMediumProdigalV2_40.0_intikhab.

    Annotate another genome or metagenome data through DMAP


    NOTE: if you use these results in your publication(s), please do cite AAMG:
    Alam I, et al. (2018) Enabling Access to Analytics of Massive Metagenomics Data through DMAP. In prep.
    Alam I, et al. (2013) INDIGO: An INtegrated annotation Data warehouse system for mIcrobial GenOmes with examples from the Red Sea extremophiles. plosOne (pubmed:24324765)