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Feature Counts


Feature
ORFs1890196
rRNA2654
tRNA21880
rfamRNA28707
Uniprot1842495
KEGG1274303
COG1120380
InterPro1455825
GO965406
TotalAnnotatedGenes1898074
TotalUnassignedGenes45349
Bioactive Genes 2415
Industrial Proteins of Interest (POIs) 359645
Total contigs or gene catalogue genes33369


Retreive sequences
OR

Provide Taxonomic-level for contig binning
Phylum   Class   Order   Family   Genus
Species

See refined binning report with links to fasta sets: 302 bin(s) & bins plot, scores plot.


rfam taxonomy assignments , counts for top 10 categories

595BacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeBrevundimonasBrevundimonas subvibrioides:633149
327BacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeAchromobacterAlcaligenes xylosoxydans xylosoxydans Achromobacter xylosoxidans:762376
318BacteriaProteobacteriaAlphaproteobacteriaCaulobacteralesCaulobacteraceaeAsticcacaulisAsticcacaulis excentricus:573065
265BacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaeAzotobacterAzotobacter vinelandii:322710
262BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaCorynebacterialesGordoniaceaeGordoniaGordonia bronchialis:526226
257BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaMicrococcalesMicrobacteriaceaeMicrobacteriumMicrobacterium testaceum Aureobacterium testaceum Brevibacterium testaceum:979556
245BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaActinomycetalesActinomycetaceaeArcanobacteriumArcanobacterium haemolyticum Corynebacterium haemolyticum:644284
235BacteriaProteobacteriaAlphaproteobacteriaPolymorphum_unresolvedPolymorphum_unresolvedPolymorphumPolymorphum gilvum:991905
216BacteriaBacteroidetesCytophagiaCytophagalesAmoebophilaceaeCandidatus AmoebophilusCandidatus Amoebophilus asiaticus:452471
202BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaCatenulisporalesCatenulisporaceaeCatenulisporaCatenulispora acidiphila:479433

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combined taxonomy assignments , counts for top 10 categories

52225BacteriaProteobacteriaDeltaproteobacteriaDesulfobacteralesDesulfobacteraceaeDesulfococcusDesulfococcus multivorans:1121405
29801BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaCorynebacterialesNocardiaceaeNocardiaNocardia amikacinitolerans:756689
27645BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium intestinale:1121320
26083BacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrioDesulfovibrio desulfuricans:876
22492BacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaeAzotobacterAzotobacter beijerinckii:170623
18314BacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacteriumMethylobacterium sp Leaf112:1736258
15806BacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeGelidibacterGelidibacter algens:49280
15493ArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacteriumHalobacterium salinarum Halobacterium halobium:64091
13800BacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobiumRhizobium sp Root564:1736563
12898BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePonticoccusPonticoccus lacteus:340996

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rrna taxonomy assignments , counts for top 10 categories

53BacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrioDesulfovibrio alaskensis:207559
42BacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus licheniformis:279010
40BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium cellulovorans:573061
33BacteriaProteobacteriaDeltaproteobacteriaSyntrophobacteralesSyntrophaceaeSyntrophusSyntrophus aciditrophicus:56780
30BacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangiaZunongwangia profunda:655815
28BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium saccharoperbutylacetonicum:931276
28BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeRoseibacteriumRoseibacterium elongatum:159346
27BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaPropionibacterialesNocardioidaceaeNocardioidesNocardioides sp strain ATCC BAA-499 JS614:196162
24BacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeHalodesulfovibrioHalodesulfovibrio aestuarii:126333
24BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaMicrococcalesMicrobacteriaceaeMicrobacteriumMicrobacterium testaceum Aureobacterium testaceum Brevibacterium testaceum:979556

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coding taxonomy assignments , counts for top 10 categories

52225BacteriaProteobacteriaDeltaproteobacteriaDesulfobacteralesDesulfobacteraceaeDesulfococcusDesulfococcus multivorans:1121405
29801BacteriaActinobacteriaActinobacteria high G+C Gram-positive bacteriaCorynebacterialesNocardiaceaeNocardiaNocardia amikacinitolerans:756689
27645BacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridiumClostridium intestinale:1121320
26083BacteriaProteobacteriaDeltaproteobacteriaDesulfovibrionalesDesulfovibrionaceaeDesulfovibrioDesulfovibrio desulfuricans:876
22488BacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaeAzotobacterAzotobacter beijerinckii:170623
18314BacteriaProteobacteriaAlphaproteobacteriaRhizobialesMethylobacteriaceaeMethylobacteriumMethylobacterium sp Leaf112:1736258
15802BacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeGelidibacterGelidibacter algens:49280
15458ArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHalobacteriumHalobacterium salinarum Halobacterium halobium:64091
13800BacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobiumRhizobium sp Root564:1736563
12893BacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaePonticoccusPonticoccus lacteus:340996

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DOMAINS , counts for top 10 categories

35688DomainIPR003439:ABC transporter-like
28676Conserved_siteIPR017871:ABC transporter, conserved site
24712DomainIPR001789:Signal transduction response regulator, receiver domain
21972DomainIPR000515:ABC transporter type 1, transmembrane domain MetI-like
19039DomainIPR003594:Histidine kinase-like ATPase, C-terminal domain
13686FamilyIPR011701:Major facilitator superfamily
11981DomainIPR003661:Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
11288DomainIPR000182:GNAT domain
11124DomainIPR000847:Transcription regulator HTH, LysR
11063DomainIPR001647:DNA-binding HTH domain, TetR-type

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IndustrialPOIs , counts for top 10 categories

5316High Identities >=45%EnvironmentDegradation.POIOxidoreductases.NADH:ubiquinone reductase (H(+)-translocating).EC:1.6.5.3
5316High Identities >=45%Medicine_and_PharmaDrug_development.POIOxidoreductases.NADH:ubiquinone reductase (H(+)-translocating).EC:1.6.5.3
5194High Identities >=45%Molecular_biologyMolecular_biology.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
5194High Identities >=45%Medicine_and_PharmaDrug_development.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
5194High Identities >=45%AnalyticsDiagnostics_generic.POITransferases.DNA-directed DNA polymerase.EC:2.7.7.7
4691High Identities >=45%Medicine_and_PharmaPharmaceutical_generic.POIHydrolases.DNA helicase.EC:3.6.4.12
3871Low Identities <45%Molecular_biologyMolecular_biology.POITransferases.Diguanylate cyclase.EC:2.7.7.65
3871Low Identities <45%Bioprocess_engineeringSynthesis.POITransferases.Diguanylate cyclase.EC:2.7.7.65
2823Low Identities <45%Medicine_and_PharmaDrug_development.POIOxidoreductases.3-oxoacyl-[acyl-carrier-protein] reductase.EC:1.1.1.100
2754High Identities >=45%Medicine_and_PharmaMedical_generic.POIHydrolases.Serine-type D-Ala-D-Ala carboxypeptidase.EC:3.4.16.4

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KEGG , counts for top 10 categories

6772noBRITEcategorySuperPathway-NASpecific-Pathway-NAPathway-NARNA polymerase sigma-70 factor, ECF subfamily
6772Transcription machinerySuperPathway-NASpecific-Pathway-NAPathway-NARNA polymerase sigma-70 factor, ECF subfamily
6442noBRITEcategorySuperPathway-NASpecific-Pathway-NAPathway-NAputative transposase
5863noBRITEcategorySuperPathway-NASpecific-Pathway-NAPathway-NAiron complex outermembrane recepter protein
5863TransportersSuperPathway-NASpecific-Pathway-NAPathway-NAiron complex outermembrane recepter protein
5491KEGG modulesMetabolismBiosynthesis of other secondary metabolitesProdigiosin biosynthesis3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
5491KEGG modulesMetabolismLipid metabolismFatty acid biosynthesis3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
5491KEGG modulesMetabolismGlobal and overview mapsMetabolic pathways3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
5491Lipid biosynthesis proteinsMetabolismMetabolism of cofactors and vitaminsBiotin metabolism3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
5491Lipid biosynthesis proteinsMetabolismBiosynthesis of other secondary metabolitesProdigiosin biosynthesis3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]

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BIOACTIVEs , counts for top 10 categories

564High Identities >=45%toxinRibonuclease VapC SourcesvapC
471High Identities >=45%secretedEnolase Sourceseno
85High Identities >=45%secretedFlagellar hook-associated protein 1 SourcesflgK
12High Identities >=45%secretedCell surface glycoprotein Sourcescsg
12High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesSAMN02745941_01730
11High Identities >=45%secretedFlagellar hook-associated protein 2 SourcesfliD
11High Identities >=45%secretedFlagellin SourcesSAMN05660830_01509
10High Identities >=45%antimicrobial,bacteriolytic enzymeLysozyme SourcesSAMN05421751_1386
10High Identities >=45%secretedFlagellin SourcesSAMN05660830_01025
9High Identities >=45%secretedFlagellin SourcesSAMN05660830_01026

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All Annotation Sources Summary , counts for top 10 categories

543331Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA
304511Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINS-NAGO-NABIOACTIVEs-NAIndustrialPOIs-NA
237401Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs
167596Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
151567Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
88755Protein(ORF)With AnnotationUNIPROTCOG-NAKEGGDOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA
59708Protein(ORF)With AnnotationUNIPROTCOG-NAKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs-NA
50055Protein(ORF)With AnnotationUNIPROTCOGKEGGDOMAINSGO-NABIOACTIVEs-NAIndustrialPOIs
46098Protein(ORF)With AnnotationUNIPROTCOG-NAKEGG-NADOMAINSGOBIOACTIVEs-NAIndustrialPOIs-NA
45349Protein(ORF)Without AnnotationUNIPROT-NACOG-NAKEGG-NADOMAINS-NAGO-NABIOACTIVEs-NAIndustrialPOIs-NA

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COG , counts for top 10 categories

9924POORLY CHARACTERIZEDGeneral function prediction onlyCOG1028
9924METABOLISMLipid transport and metabolismCOG1028
9924METABOLISMSecondary metabolites biosynthesis, transport and catabolismCOG1028
8812INFORMATION STORAGE AND PROCESSINGTranscriptionCOG0583
8154METABOLISMAmino acid transport and metabolismCOG0477
8154METABOLISMInorganic ion transport and metabolismCOG0477
8154METABOLISMCarbohydrate transport and metabolismCOG0477
8154POORLY CHARACTERIZEDGeneral function prediction onlyCOG0477
6445INFORMATION STORAGE AND PROCESSINGTranscriptionCOG1595
6342CELLULAR PROCESSES AND SIGNALINGSignal transduction mechanismsCOG0642

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AntiBioticResistance , counts for top 10 categories

1987multidrugmultidrug_ABC_transporter
1245multidrugmtrA
1029multidrugompR
875tetracyclinetetA(48)
695glycopeptidevanR
569unclassifiedtruncated_putative_response_regulator_ArlR
480phenicolchloramphenicol_exporter
444bacitracinbcrA
435glycopeptidevanH
427bacitracinbacA

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GO , counts for top 10 categories

110115Biological Processoxidation-reduction processGO:0055114
99831Molecular FunctionATP bindingGO:0005524
98135Subcellular LocationmembraneGO:0016020
80827Subcellular Locationintegral to membraneGO:0016021
80805Biological Processtransmembrane transportGO:0055085
78477Biological Processregulation of transcription, DNA-dependentGO:0006355
76029Molecular FunctionDNA bindingGO:0003677
69120Molecular Functionoxidoreductase activityGO:0016491
62359Biological Processmetabolic processGO:0008152
57946Molecular Functioncatalytic activityGO:0003824

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Results are available as shown below.
  • All annotation result files and interactive html graphs, also explained here.
  • All annotation result files archived in one tar.gz file {right click and save}

  • NOTE:If you want to add these annotations to INDIGO or DMAP, please write to us quoting this tag:

    1502720475383_CamiHighProdigalV2_40.0_intikhab.

    Annotate another genome or metagenome data through DMAP


    NOTE: if you use these results in your publication(s), please do cite AAMG:
    Alam I, et al. (2018) Enabling Access to Analytics of Massive Metagenomics Data through DMAP. In prep.
    Alam I, et al. (2013) INDIGO: An INtegrated annotation Data warehouse system for mIcrobial GenOmes with examples from the Red Sea extremophiles. plosOne (pubmed:24324765)