CoVMT Variant Detection
COVID-19 Virus genome sequence analysis; detection of variants in full/partial SARS-CoV-2 sequences
a full or partial genome sequence of the COVID-19 virus (example).
upload fasta file sequence.

Input contig/genome will be aligned to SARS-CoV-2 reference genome and mutations will be compared to the latest set of Mutation Fingerprints in CovMT to derive variant information. Variant detection is executed by the CBRC BEACON variant detection service.

Gene #mutations
(*) Mutations shared with SARS-like genomes
(#) Mutations related to the immune escape, reference.