HMCan (Histone Modifications in Cancer) is a set of methods to analayze ChIP-seq data obtained from cancer samples. Currently, this set includes:

• HMCan, a program to perfrom peak calling,
• HMCan-diff, a program to perform differential peak calling.

Related publications

• HMCan: HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
  Haitham Ashoor; Aurelie Herault; Aurelie Kamoun; Francois Radvanyi; Vladimir B. Bajic; Emmanuel Barillot; Valentina Boeva
  Bioinformatics 2013; doi: 10.1093/bioinformatics/btt524


• HMCan-diff: HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics.
  Haitham Ashoor Caroline Louis-Brennetot Isabelle Janoueix-Lerosey Vladimir B. Bajic Valentina Boeva
  Nucleic Acids Res 2017; doi: https://doi.org/10.1093/nar/gkw1319